Congressional negotiators reached a bipartisan deal late Sunday to fund the federal government through September, easing the threat of a shutdown but denying President Trump several key priorities — including money for his promised border wall with Mexico.

The estimated $1-trillion omnibus package would provide $12.5 billion in increased military funding, about half the amount Trump requested from Congress. Another $2.5 billion for defense is available if the administration submits a counter-terrorism strategy to fight Islamic State.

But the final deal failed to include the big cuts to domestic non-defense accounts that Trump was seeking, and thus emerged as something of an embarrassment to the White House in his first budget negotiation with Congress.

It actually would increase federal spending on medical research, green energy programs and other areas that the White House had pegged for sharp reductions. Under it, the National Institutes of Health would see an increase of 6%, or $2 billion.

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